Package: karyotapR
Title: DNA Copy Number Analysis for Genome-Wide Tapestri Panels
Version: 1.0.2
Authors@R: 
    person("Joseph", "Mays", email = "josephcmays@gmail.com", 
    role = c("aut", "cre", "cph"),
    comment = c(ORCID = "0000-0003-4903-938X"))
Description: Analysis of DNA copy number in single cells using custom
        genome-wide targeted DNA sequencing panels for the Mission Bio
        Tapestri platform. Users can easily parse, manipulate, and
        visualize datasets produced from the automated 'Tapestri
        Pipeline', with support for normalization, clustering, and copy
        number calling. Functions are also available to deconvolute
        multiplexed samples by genotype and parsing barcoded reads from
        exogenous lentiviral constructs.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/joeymays/karyotapR,
        http://joeymays.xyz/karyotapR/
BugReports: https://github.com/joeymays/karyotapR/issues
biocViews:
Imports: circlize, cli, ComplexHeatmap, dbscan, dplyr, fitdistrplus,
        GenomeInfoDb, GenomicRanges, ggplot2, gtools, IRanges,
        magrittr, methods, purrr, rhdf5, rlang, S4Vectors, stats,
        SummarizedExperiment, tibble, tidyr, umap, viridisLite
Depends: R (>= 4.1), SingleCellExperiment
Suggests: Biostrings, knitr, rmarkdown, Rsamtools, testthat (>= 3.0.0)
Config/testthat/edition: 3
Config/Needs/website: forcats, purrr, ggdist
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev perl python3
        zlib1g-dev
Repository: https://joeymays.r-universe.dev
Date/Publication: 2025-11-02 15:44:37 UTC
RemoteUrl: https://github.com/joeymays/karyotapr
RemoteRef: HEAD
RemoteSha: 8922a7f37f6b512fb0c4a577adab517f2d80050b
NeedsCompilation: no
Packaged: 2026-10-01 09:23:20 UTC; root
Author: Joseph Mays [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-4903-938X>)
Maintainer: Joseph Mays <josephcmays@gmail.com>